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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside diphosphate biosynthetic process
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Accession:GO:0009188 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate anabolism;   ribonucleoside diphosphate biosynthesis;   ribonucleoside diphosphate formation;   ribonucleoside diphosphate synthesis

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ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO (PMID:24767988) UniProt PMID:24767988 NCBI chrNW_004624742:29,547,237...29,574,160 JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in ISO
IEA		 RGD
UniProt		 PMID:19049516 GO_REF:0000104 RGD:5134369 NCBI chrNW_004624760:7,684,098...7,693,051
Ensembl chrNW_004624760:7,684,109...7,693,405 		JBrowse link
G Ak2 adenylate kinase 2 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:5123889 GO_REF:0000002 GO_REF:0000104 RGD:5490208 NCBI chrNW_004624764:16,089,357...16,113,275 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:5010295 PMID:5123889 RGD:5490208 RGD:5490216 NCBI chrNW_004624736:9,428,736...9,494,645 JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:3010881 GO_REF:0000118 RGD:5133253 NCBI chrNW_004624859:5,452,694...5,495,840 JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004624937:892,840...898,799
Ensembl chrNW_004624937:892,854...898,799 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) MGI PMID:25678555 NCBI chrNW_004624738:9,318,213...9,340,765
Ensembl chrNW_004624738:9,318,232...9,340,925 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:3010881 GO_REF:0000118 RGD:5133253 NCBI chrNW_004624859:5,452,694...5,495,840 JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chrNW_004624746:14,254,811...14,268,034
Ensembl chrNW_004624746:14,254,193...14,268,034 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341)
(PMID:6154574)		 MGI PMID:2419341 PMID:6154574 NCBI chrNW_004624731:761,235...780,355
Ensembl chrNW_004624731:761,210...779,321 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9085
      biosynthetic process 6359
        organic substance biosynthetic process 6300
          organophosphate biosynthetic process 461
            nucleoside phosphate biosynthetic process 213
              nucleoside diphosphate biosynthetic process 12
                ribonucleoside diphosphate biosynthetic process 9
                  purine ribonucleoside diphosphate biosynthetic process + 4
                  pyrimidine ribonucleoside diphosphate biosynthetic process + 4
Path 2
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9085
      organic substance metabolic process 8667
        organic cyclic compound metabolic process 4854
          nucleobase-containing compound metabolic process 4436
            nucleobase-containing small molecule metabolic process 549
              nucleoside phosphate metabolic process 494
                nucleoside diphosphate metabolic process 120
                  nucleoside diphosphate biosynthetic process 12
                    ribonucleoside diphosphate biosynthetic process 9
                      purine ribonucleoside diphosphate biosynthetic process + 4
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 4
paths to the root